Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RMCT_0002Integral membrane protein. (147 aa)    
Predicted Functional Partners:
RMCT_4676
Short chain dehydrogenase.
 
   
 0.873
DprE1_2
Oxidoreductase.
 
   
 0.863
EmbC_1
Integral membrane indolylacetylinositol arabinosyltransferase embC.
 
  
 0.855
EmbA
Integral membrane indolylacetylinositol arabinosyltransferase embA.
 
  
 0.784
RMCT_4661
Phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
 
   
 0.778
EmbC_2
Integral membrane indolylacetylinositol arabinosyltransferase embB.
 
  
 0.771
RMCT_4346
Short-chain type dehydrogenase.
 
   
 0.768
RMCT_0003
Putative uncharacterized protein.
  
  
 0.729
RMCT_0667
Integral membrane protein.
 
   
 0.668
AftA
Transmembrane protein.
 
   
 0.620
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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