Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RfbDO-antigen/lipopolysaccharide transport integral membrane protein ABC transporter rfbD. (276 aa)    
Predicted Functional Partners:
TagH
O-antigen/lipopolysaccharide transport ATP-binding protein ABC transporter rfbE.
 
 0.999
GlfT1
L-rhamnosyltransferase.
 
  
 0.987
RMCT_0008
Hypothetical protein.
     
 0.883
Glf
UDP-galactopyranose mutase glf.
 
  
 0.793
WbbL
dTDP-RHA:A-D-GlcNAc-diphosphoryl polyprenol-A-3-L-rhamnosyl transferase wbbL1.
 
  
 0.762
GlfT2
Bifunctional UDP-galactofuranosyl transferase glfT.
 
  
 0.722
RMCT_2172
Transposase, IS4 family protein.
  
  
 0.667
RMCT_2880
Transposase, IS4 family protein.
  
  
 0.667
RMCT_4607
Transposase, IS4 family protein.
  
  
 0.667
RMCT_4711
Transposase IS4 family protein.
  
  
 0.667
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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