Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
RMCT_0010Aminotransferase. (379 aa)    
Predicted Functional Partners:
NifU
Nitrogen fixation-like protein.
 
 
 0.959
RMCT_3157
FeS assembly protein SufB.
 
 
 0.891
YurY
FeS assembly ATPase SufC.
 
  
 0.890
SufD
FeS assembly protein SufD.
 
 
 0.863
RMCT_2270
Fe-S metabolism associated SufE.
  
 
 0.727
RMCT_2936
Endonuclease/exonuclease/phosphatase.
   
   0.670
RfbD
O-antigen/lipopolysaccharide transport integral membrane protein ABC transporter rfbD.
 
     0.554
RMCT_4008
Secreted protein.
 
   
 0.529
RMCT_0899
Protein of unknown function.
 
    0.527
egtD
S-adenosyl-L-methionine- dependentmethyltransferase; Catalyzes the SAM-dependent triple methylation of the alpha- amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine; Belongs to the methyltransferase superfamily. EgtD family.
  
  
 0.523
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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