Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0063Hypothetical protein. (418 aa)    
Predicted Functional Partners:
LysC
Aspartate kinase; Belongs to the aspartokinase family.
       0.861
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
       0.861
RMCT_2644
Putative uncharacterized protein.
  
     0.764
RMCT_3586
Immunogenic protein MPB64/MPT64.
  
     0.764
RMCT_2223
PPE family protein.
  
     0.754
RMCT_4047
Putative uncharacterized protein.
  
     0.751
Snm
Transmembrane protein.
  
     0.751
RMCT_0929
Mycobacterium membrane protein.
  
     0.741
RMCT_0740
Alanine rich transmembrane protein.
  
     0.740
RMCT_2344
MmpS3 protein.
  
     0.734
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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