Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0086Putative uncharacterized protein. (425 aa)    
Predicted Functional Partners:
RMCT_0085
Putative uncharacterized protein.
 
     0.956
RMCT_0082
Lipoprotein.
 
     0.950
RMCT_0084
Putative uncharacterized protein.
 
     0.929
RMCT_0080
RDD domain-containing protein.
 
    0.796
RMCT_0083
Methanol dehydrogenase transcriptional regulatory protein moxR2.
 
     0.768
RMCT_0081
Transmembrane protein.
 
     0.762
Fgd1_6
Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase.
       0.633
YqeY
GatB/Yqey.
       0.597
RMCT_4437
Membrane protein.
  
   
 0.523
RMCT_3832
Hypothetical protein.
  
     0.505
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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