Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YqeYGatB/Yqey. (154 aa)    
Predicted Functional Partners:
Fgd1_6
Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase.
       0.868
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
    0.663
RMCT_0089
Putative uncharacterized protein.
       0.657
RMCT_0085
Putative uncharacterized protein.
       0.628
RMCT_0086
Putative uncharacterized protein.
       0.597
RMCT_0082
Lipoprotein.
       0.571
RMCT_0083
Methanol dehydrogenase transcriptional regulatory protein moxR2.
       0.528
RMCT_0084
Putative uncharacterized protein.
       0.528
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
  
    0.480
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
    0.463
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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