STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fgd1_6Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase. (340 aa)    
Predicted Functional Partners:
YqeY
GatB/Yqey.
       0.883
CofD
LPPG:FO 2-phospho-L-lactate transferase.
 
   
 0.795
Ddn_2
aclJ protein.
 
   
 0.740
RMCT_4399
Hypothetical protein.
 
   
 0.735
fbiD
2-phospho-L-lactate guanylyltransferase; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor.
 
   
 0.711
Ddn_1
Deazaflavin-dependent nitroreductase family protein.
 
   
 0.710
Ddn_3
Deazaflavin-dependent nitroreductase family protein.
  
     0.705
RMCT_2287
F420-0--gamma-glutamyl ligase.
 
  
 0.680
Fdm
Alcohol dehydrogenase.
 
   
 0.679
RMCT_0089
Putative uncharacterized protein.
       0.658
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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