Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RMCT_0095Metallophosphoesterase. (325 aa)    
Predicted Functional Partners:
CysK
Lyase.
     
 0.903
Pon1
Bifunctional membrane-associated penicillin-binding protein 1A/1B ponA2 : penicillin-insensitive transglycosylase + penicillin-sensitive transpeptidase.
       0.714
RMCT_3804
Protein of unknown function.
  
     0.654
RMCT_0672
Protein of unknown function.
  
     0.625
whiA
Transcriptional regulatory protein whiA; Involved in cell division and chromosome segregation.
 
     0.567
pheT
phenylalanyl-tRNA synthetase subunit beta; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
    0.559
RMCT_1556
Glycosyl transferase family protein.
 
     0.557
RMCT_0803
DNA polymerase III subunit delta.
 
     0.556
GreA_2
Transcription elongation factor; Belongs to the GreA/GreB family.
 
   
 0.525
YgfZ
Folate-binding protein YgfZ; Belongs to the GcvT family.
 
     0.520
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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