Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0100Hypothetical protein. (53 aa)    
Predicted Functional Partners:
RMCT_0101
Endoribonuclease L-PSP family protein.
  
    0.883
PksB
Hydrolase.
       0.868
RMCT_2846
Protein of unknown function.
  
     0.771
RMCT_0099
Anion-transporting ATPase.
       0.674
ArsA_2
Anion transporter ATPase.
       0.559
RMCT_2108
TPR repeat-containing protein.
  
     0.458
RMCT_0170
RecF/RecN/SMC N-terminal domain-containing protein.
  
     0.440
RMCT_1762
Protein of unknown function.
  
     0.435
RMCT_0117
Helicase/secretion CpaE-like protein.
  
     0.432
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
  
     0.423
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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