Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PksBHydrolase. (265 aa)    
Predicted Functional Partners:
RMCT_0101
Endoribonuclease L-PSP family protein.
  
    0.884
RMCT_3590
NUDIX hydrolase.
     0.870
RMCT_0100
Hypothetical protein.
       0.868
RMCT_0099
Anion-transporting ATPase.
     
 0.671
BedA
NAD(FAD)-dependent dehydrogenase.
 
 
 0.668
FccB
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
 
 
 0.613
ArsA_2
Anion transporter ATPase.
     
 0.584
RMCT_4415
Triacylglycerol lipase.
  
 
 0.555
RMCT_2740
Beta lactamase like protein.
      
 0.541
BaeB_3
Beta-lactamase domain-containing protein.
 
 
 0.513
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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