Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0113Protease. (219 aa)    
Predicted Functional Partners:
RMCT_4667
Cutinase.
 
  
 0.807
RMCT_1386
Lipoprotein lprC.
  
     0.770
RMCT_4662
Transmembrane protein.
 
     0.770
RMCT_1165
Twin-arginine translocation pathway signal.
 
   
 0.769
RMCT_1387
Lipoprotein lprB.
  
     0.767
lpqB
Lipoprotein LpqB.
 
     0.765
EmbC_2
Integral membrane indolylacetylinositol arabinosyltransferase embB.
 
   
 0.764
RMCT_0667
Integral membrane protein.
  
     0.758
RMCT_3585
Pyrrolo-quinoline quinone.
 
     0.757
RMCT_4136
Protein of unknown function.
  
     0.749
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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