STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XerD_7Phage integrase family protein; Belongs to the 'phage' integrase family. (402 aa)    
Predicted Functional Partners:
RMCT_0121
Phage integrase family protein.
 
     0.929
RMCT_0123
Putative uncharacterized protein.
 
  
 0.876
RMCT_2949
Putative uncharacterized protein.
 
   
 0.731
RMCT_2047
ATPase.
 
   
 0.685
RMCT_0120
Putative uncharacterized protein.
       0.673
RMCT_0119
Putative uncharacterized protein.
       0.655
RMCT_0418
Cutinase.
  
     0.587
UreI
Amidase substrates transport protein.
  
     0.538
RMCT_4156
AraC family transcriptional regulator.
 
  
 0.517
RMCT_0039
Metallo-beta-lactamase superfamily enzyme.
 
  
 0.514
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.