Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XerD_7Phage integrase family protein; Belongs to the 'phage' integrase family. (402 aa)    
Predicted Functional Partners:
RMCT_0121
Phage integrase family protein.
 
     0.929
RMCT_0123
Putative uncharacterized protein.
 
  
 0.871
RMCT_2949
Putative uncharacterized protein.
 
   
 0.727
RMCT_0120
Putative uncharacterized protein.
       0.672
RMCT_2047
ATPase.
 
     0.665
RMCT_0119
Putative uncharacterized protein.
       0.655
RMCT_0418
Cutinase.
  
     0.587
UreI
Amidase substrates transport protein.
  
     0.538
NudF_1
NTP pyrophosphohydrolase.
  
  
 0.512
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
  
  
 0.512
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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