Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0133Membrane protein. (108 aa)    
Predicted Functional Partners:
RMCT_0134
Helicase/secretion neighborhood TadE-like protein.
 
     0.889
RMCT_0132
Hypothetical protein.
  
    0.844
RMCT_0130
Type II secretion system protein F.
  
  
 0.837
RMCT_0131
Alanine rich membrane protein.
  
  
 0.808
RMCT_1575
Flp pilus assembly protein CpaB.
 
  
 0.804
RMCT_4559
Stage II sporulation protein E.
  
  
 0.709
PtlH
Pilus assembly protein CpaF.
  
  
 0.697
RMCT_1763
Transmembrane protein.
  
     0.577
RMCT_0710
Conserved protein of unknown function.
  
     0.568
RMCT_0129
TrbB protein.
       0.501
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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