STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0134Helicase/secretion neighborhood TadE-like protein. (116 aa)    
Predicted Functional Partners:
RMCT_0132
Hypothetical protein.
 
   
 0.927
RMCT_0133
Membrane protein.
 
     0.903
RMCT_0130
Type II secretion system protein F.
 
   
 0.825
RMCT_0131
Alanine rich membrane protein.
     
 0.800
PtlH
Pilus assembly protein CpaF.
     
 0.651
RMCT_0117
Helicase/secretion CpaE-like protein.
     
 0.555
RMCT_0129
TrbB protein.
       0.501
RMCT_2940
Azi37.
  
     0.454
RMCT_2595
ATPase.
 
   
 0.404
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.