Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Csp | RMCT_0136 | RMCT_1772 | RMCT_0136 | Cold shock protein B cspB. | Helicase. | 0.486 |
| Csp | RMCT_1119 | RMCT_1772 | RMCT_1119 | Cold shock protein B cspB. | spoIIIJ-associated protein. | 0.540 |
| Csp | RMCT_4213 | RMCT_1772 | RMCT_4213 | Cold shock protein B cspB. | RNA-binding protein; Belongs to the UPF0109 family. | 0.480 |
| Csp | deaD | RMCT_1772 | RMCT_1995 | Cold shock protein B cspB. | Cold-shock deaD-box protein A deaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.792 |
| Csp | topA | RMCT_1772 | RMCT_0139 | Cold shock protein B cspB. | DNA topoisomerase I topA; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA [...] | 0.442 |
| CspA | RMCT_0136 | RMCT_0137 | RMCT_0136 | Cold shock protein A cspA. | Helicase. | 0.743 |
| CspA | RMCT_0138 | RMCT_0137 | RMCT_0138 | Cold shock protein A cspA. | Hypothetical protein. | 0.735 |
| CspA | deaD | RMCT_0137 | RMCT_1995 | Cold shock protein A cspA. | Cold-shock deaD-box protein A deaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.722 |
| CspA | topA | RMCT_0137 | RMCT_0139 | Cold shock protein A cspA. | DNA topoisomerase I topA; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA [...] | 0.566 |
| RMCT_0136 | Csp | RMCT_0136 | RMCT_1772 | Helicase. | Cold shock protein B cspB. | 0.486 |
| RMCT_0136 | CspA | RMCT_0136 | RMCT_0137 | Helicase. | Cold shock protein A cspA. | 0.743 |
| RMCT_0136 | RMCT_0138 | RMCT_0136 | RMCT_0138 | Helicase. | Hypothetical protein. | 0.571 |
| RMCT_0136 | RMCT_1119 | RMCT_0136 | RMCT_1119 | Helicase. | spoIIIJ-associated protein. | 0.641 |
| RMCT_0136 | RMCT_2882 | RMCT_0136 | RMCT_2882 | Helicase. | IS1096, tnpA protein. | 0.475 |
| RMCT_0136 | RMCT_4213 | RMCT_0136 | RMCT_4213 | Helicase. | RNA-binding protein; Belongs to the UPF0109 family. | 0.634 |
| RMCT_0136 | RMCT_4622 | RMCT_0136 | RMCT_4622 | Helicase. | Transposase for insertion sequence element. | 0.477 |
| RMCT_0136 | deaD | RMCT_0136 | RMCT_1995 | Helicase. | Cold-shock deaD-box protein A deaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.594 |
| RMCT_0136 | rnj | RMCT_0136 | RMCT_0749 | Helicase. | mRNA degradation ribonucleases J1/J2; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | 0.464 |
| RMCT_0136 | topA | RMCT_0136 | RMCT_0139 | Helicase. | DNA topoisomerase I topA; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA [...] | 0.598 |
| RMCT_0138 | CspA | RMCT_0138 | RMCT_0137 | Hypothetical protein. | Cold shock protein A cspA. | 0.735 |
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