STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0176Pyridoxamine 5'-phosphate oxidase-like protein. (139 aa)    
Predicted Functional Partners:
RMCT_0174
Excinuclease ATPase subunit.
       0.773
UvrA_3
Excinuclease ABC subunit A.
       0.773
RMCT_0173
Uncharacterized protein.
       0.689
StrE_1
Putative oxidoreductase.
       0.496
TrxC
Thioredoxin; Belongs to the thioredoxin family.
       0.493
LuxA_4
Luciferase family protein.
  
     0.459
Fgd_1
Oxidoreductase.
  
     0.441
RMCT_4121
F420-dependent oxidoreductase, MSMEG_4879 family.
  
     0.432
RMCT_0410
F420-dependent oxidoreductase.
  
     0.419
EchA8_16
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.411
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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