Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0191Putative uncharacterized protein. (192 aa)    
Predicted Functional Partners:
RMCT_2925
Phosphoesterase, PA-phosphatase related protein.
 
    0.719
RMCT_0039
Metallo-beta-lactamase superfamily enzyme.
 
     0.596
RMCT_0190
Hypothetical protein.
       0.594
RMCT_3216
HNH nuclease.
 
   
 0.563
RMCT_1695
Putative uncharacterized protein.
 
     0.548
RMCT_0121
Phage integrase family protein.
  
     0.463
MmpL8_5
MMPL domain-containing protein.
 
     0.442
RMCT_2302
Secretory lipase.
 
   
 0.402
RsmC
Methyltransferase small; Belongs to the methyltransferase superfamily.
 
    0.402
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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