Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RipB_2Cell wall-associated hydrolase, invasion-associated protein. (172 aa)    
Predicted Functional Partners:
RipA
NLP/P60 protein.
  
  
 0.724
RMCT_3075
Conserved alanine and proline rich protein.
  
  
 0.670
RMCT_1165
Twin-arginine translocation pathway signal.
  
  
 0.606
RMCT_0258
Putative uncharacterized protein.
       0.580
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
 
 0.564
RMCT_0257
acyl-CoA ligase FadD31.
     
 0.557
FtsX
Cell division protein ftsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 
 0.555
RMCT_3883
NLP/P60 protein.
  
  
0.550
PaaX
Phenylacetic acid-responsive transcriptional repressor.
      
 0.541
Iap
Endopeptidase YddH.
  
  
0.510
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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