STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YsdCM42 glutamyl aminopeptidase superfamily protein. (399 aa)    
Predicted Functional Partners:
CphA
GNAT family acetyltransferase.
 
  
 0.844
AsnB_1
Asparagine synthase, glutamine-hydrolyzing.
 
  
 0.664
RMCT_2399
Taurine catabolism dioxygenase TauD, TfdA family.
  
     0.554
RMCT_0267
Polyketide cyclase / dehydrase and lipid transport.
       0.526
RMCT_0265
CsbD family protein.
     
 0.514
RMCT_2404
Transcriptional regulator.
  
     0.481
AsnB_2
Asparagine synthetase asnB.
 
  
 0.462
DrgA_1
Nitroreductase.
  
    0.461
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
  
 0.458
RMCT_2185
Glycogen phosphorylase glgP.
  
  
 0.455
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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