STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0280Peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins. (209 aa)    
Predicted Functional Partners:
DacB_1
Penicillin-binding protein dacB1; Belongs to the peptidase S11 family.
    
 0.911
DacB_4
D-alanyl-D-alanine carboxypeptidase.
    
 0.911
DacB_2
D-alanyl-D-alanine carboxypeptidase dacB2; Belongs to the peptidase S11 family.
    
 0.911
DacB_3
D-alanyl-D-alanine carboxypeptidase dacB2; Belongs to the peptidase S11 family.
    
 0.911
PbpA_1
Penicillin-binding protein pbpA.
    
 0.907
PenA
Penicillin-binding membrane protein pbpB.
    
 0.907
RMCT_0279
Type I phosphodiesterase/nucleotide pyrophosphatase.
       0.769
RMCT_0281
Putative uncharacterized protein; Belongs to the UPF0246 family.
       0.762
RMCT_0278
Putative uncharacterized protein.
       0.667
Pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
       0.516
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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