Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0307Hypothetical protein. (74 aa)    
Predicted Functional Partners:
RMCT_0308
Putative uncharacterized protein.
       0.773
Lvr_3
Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.751
RMCT_0310
Polyketide cyclase / dehydrase and lipid transport.
       0.750
RMCT_3688
Conserved protein of unknown function.
 
     0.593
FbpC_3
Esterase.
       0.562
RMCT_1443
Nitroreductase.
 
  
 0.512
Cyp124_2
Cytochrome P450.
       0.488
RMCT_2088
Hypothetical protein.
 
    0.482
RMCT_2287
F420-0--gamma-glutamyl ligase.
 
  
 0.465
RMCT_0649
Putative uncharacterized protein.
 
  
 0.444
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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