STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lvr_3Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (386 aa)    
Predicted Functional Partners:
RMCT_0310
Polyketide cyclase / dehydrase and lipid transport.
  
    0.831
RMCT_0307
Hypothetical protein.
       0.752
RMCT_0308
Putative uncharacterized protein.
       0.741
PolS_1
Short-chain dehydrogenase/reductase SDR.
 
     0.720
YcdF_2
Dehydrogenase.
 
    0.584
FabG_14
Glucose 1-dehydrogenase.
 
    0.574
FbpC_3
Esterase.
       0.553
RMCT_1626
Dehydrogenase.
 
    0.536
RMCT_2417
Short-chain alcohol dehydrogenase.
  
     0.522
EryF
Cytochrome P450 140 cyp140.
  
    0.520
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.