Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0316Carboxymuconolactone decarboxylase. (159 aa)    
Predicted Functional Partners:
Bfr
Bacterioferritin bfrA; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
     
 0.779
RMCT_1262
Putative uncharacterized protein.
 
   
 0.651
RMCT_1188
Regulatory protein LuxR.
 
     0.650
RMCT_4242
TetR family transcriptional regulator.
 
    0.644
YvdT_2
TetR family transcriptional regulator.
 
    0.620
RMCT_0196
Putative uncharacterized protein.
 
   
 0.600
RMCT_4440
Putative uncharacterized protein.
 
   
 0.541
RMCT_4045
Membrane protein.
  
     0.520
SuaB_2
Ferredoxin.
  
     0.516
RMCT_1165
Twin-arginine translocation pathway signal.
  
     0.496
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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