Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0342Integral membrane protein. (253 aa)    
Predicted Functional Partners:
XpkA
Phosphoketolase.
       0.751
RMCT_0772
lysine-N-oxygenase mbtG.
  
     0.659
RMCT_3315
Conserved alanine, arginine and proline rich membrane protein.
  
     0.659
RMCT_1485
Transmembrane protein.
 
     0.647
RMCT_1665
Integral membrane protein.
  
     0.643
RMCT_1839
Transmembrane protein.
 
     0.638
PimE
Mannosyltransferase.
 
     0.619
BaiF_1
Putative acyl-CoA transferase; Belongs to the CoA-transferase III family.
 
     0.615
RMCT_2014
Transmembrane protein.
 
    0.565
RMCT_2156
Integral membrane protein.
 
    0.559
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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