Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PolS_3Short chain dehydrogenase. (222 aa)    
Predicted Functional Partners:
Fgd_3
Oxidoreductase.
     
 0.758
KasA_2
Fatty acid synthase.
  
 0.707
KatA
Catalase.
  
 0.600
KatE
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 0.600
LgrD_2
Linear gramicidin synthetase subunit D.
 
 
 0.583
RMCT_4707
Linear gramicidin synthetase subunit D.
 
 
 0.574
ModA
Molybdate ABC transporter molybdate-binding protein.
     
 0.570
PpsA_7
Polyketide synthase pks13.
 
 
 0.565
PetC1
glycine/D-amino acid oxidase, deaminating.
 
 0.564
Pks2
Polyketide synthase pks5.
 
 
 0.564
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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