Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FbpA_1ABC transporter ferric iron-binding periplasmic protein. (343 aa)    
Predicted Functional Partners:
CysW_1
ABC-type Fe3+ transporter, permease.
 
 
 0.998
FbpC_1
iron(III) ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.991
EfeO
Periplasmic lipoprotein.
   
    0.577
RMCT_2365
Major facilitator superfamily MFS_1.
  
  
 0.563
GudP_1
Sugar phosphate permease.
  
  
 0.563
SrfAB
AMP-dependent synthetase and ligase.
 
   
 0.475
RMCT_1262
Putative uncharacterized protein.
  
    0.435
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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