STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0387Membrane-bound C-5 sterol desaturase erg3. (315 aa)    
Predicted Functional Partners:
CrtM
Phytoene synthase.
  
 
 0.781
PnbA_3
Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family.
  
  
 0.686
idi
Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
  
  
 0.635
RMCT_4559
Stage II sporulation protein E.
  
 
 0.629
UbiF_1
FAD-dependent oxidoreductase.
   
 
 0.614
TfdB
Aromatic ring hydroxylase.
   
 
 0.614
RMCT_1612
Putative uncharacterized protein.
   
 
 0.614
RMCT_1982
Putative uncharacterized protein.
   
 
 0.614
UbiF_2
Putative uncharacterized protein.
   
 
 0.614
mhpA
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase; Catalyzes the insertion of one atom of molecular oxygen into position 2 of the phenyl ring of 3-(3-hydroxyphenyl)propionate (3-HPP) and hydroxycinnamic acid (3HCI).
   
 
 0.614
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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