Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0432Transcriptional regulator. (216 aa)    
Predicted Functional Partners:
Stp_1
Arabinose efflux permease family protein.
 
  
 0.678
RMCT_0209
Protein of unknown function.
  
     0.612
ArtQ
Amino acid ABC transporter permease.
 
 
 
 0.601
RMCT_2823
Suppressor of fused protein.
  
     0.572
RMCT_0090
Putative uncharacterized protein.
 
   
 0.566
Ksi_2
Steroid delta-isomerase.
  
   
 0.539
RMCT_2241
Amidohydrolase.
 
     0.515
RMCT_0194
Aminoglycoside phosphotransferase.
 
     0.452
RMCT_1410
Putative uncharacterized protein.
 
     0.449
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.443
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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