Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BphCExtradiol dioxygenase, type I. (309 aa)    
Predicted Functional Partners:
HsaA_1
Hydroxylase.
 
 
  0.995
HsaA_5
Oxidoreductase.
 
 
  0.974
HsaD_3
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase bphD.
 
 
 0.972
HsaA_3
acyl-CoA dehydrogenase.
  
 
  0.950
HsaC
Biphenyl-2,3-diol-1,2-dioxygenase bphC.
 
 
0.919
HsaB_2
Oxidoreductase.
 
  
  0.917
KshA_4
Iron-sulfur binding oxidoreductase.
 
  
 0.808
KshA_8
Rieske (2Fe-2S) domain-containing protein.
 
  
 0.805
Hmp_2
3-ketosteroid 9alpha-hydroxylase component KshB.
 
   
 0.796
HsaD_1
Alpha/beta hydrolase.
 
  
 0.745
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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