STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SigEECF subfamily RNA polymerase sigma-24 subunit; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa)    
Predicted Functional Partners:
RMCT_0578
Putative uncharacterized protein.
 
  
 0.884
RpoE_4
RNA polymerase sigma factor SigM; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.830
SigC
RNA polymerase sigma factor sigC; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.801
RMCT_2330
Anti-sigma factor.
  
 
 0.707
RipA
NLP/P60 protein.
  
  
 0.685
RMCT_0576
Putative uncharacterized protein.
       0.682
SigB
RNA polymerase sigma factor SigF; Belongs to the sigma-70 factor family.
  
  
 0.616
RMCT_0052
N-acetylmuramoyl-L-alanine amidase.
  
    0.587
RMCT_2837
RNA polymerase sigma-70 factor.
  
 
 0.583
RpoE_2
Alternative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.572
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.