Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0578Putative uncharacterized protein. (416 aa)    
Predicted Functional Partners:
SigE
ECF subfamily RNA polymerase sigma-24 subunit; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.884
RMCT_1474
Putative uncharacterized protein.
 
    0.730
RMCT_0576
Putative uncharacterized protein.
 
     0.725
RMCT_2008
Putative uncharacterized protein.
  
     0.723
RMCT_1094
FHA domain-containing protein.
 
  
 0.690
RMCT_2544
Transmembrane protein.
  
     0.688
RMCT_2341
Conserved protein of unknown function.
 
     0.677
EccB1_1
Type VII secretion protein EccB, Actinobacterial.
 
 
 0.665
RMCT_0550
Hypothetical protein.
 
     0.664
EspB_1
Uncharacterized protein.
 
 
 0.653
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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