Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ChoD_2Cholesterol oxidase precursor choD. (578 aa)    
Predicted Functional Partners:
RMCT_1430
Cholesterol dehydrogenase.
  
 
 0.944
RMCT_1928
Cytochrome P450.
    
 0.928
ChoD_1
FAD dependent oxidoreductase.
  
  
 
0.926
ChoA
Cholesterol oxidase.
  
  
 
0.918
Cyp125
Cytochrome P450.
    
 0.917
RMCT_0297
Cytochrome P450.
    
 0.908
RMCT_1872
Cytochrome P450 monooxygenase.
    
 0.908
RMCT_0584
Conserved Mce associated membrane protein.
   
 0.720
RMCT_0585
Mce associated membrane protein.
   
 0.720
RMCT_0581
Inosine-5-monophosphate dehydrogenase guaB3.
     
 0.666
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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