Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BphC3_1Extradiol dioxygenase. (191 aa)    
Predicted Functional Partners:
TfdB
Aromatic ring hydroxylase.
 
   
 0.890
RMCT_0595
Fumarylacetoacetate hydrolase family protein.
     
 0.705
RMCT_0327
Tetratricopeptide repeat protein.
 
     0.689
AdhC
Oxidoreductase.
     
 0.614
AcsA_2
acetoacetyl-CoA synthetase.
     
 0.596
TcmG
Putative monooxygenase.
 
   
 0.594
RMCT_0600
DoxX family protein.
  
  
 0.557
RMCT_0593
Putative uncharacterized protein.
 
     0.553
AceE_1
Pyruvate dehydrogenase E1 component.
       0.532
RMCT_0194
Aminoglycoside phosphotransferase.
 
   
 0.512
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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