STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0608Nitroreductase. (213 aa)    
Predicted Functional Partners:
AtsA_1
Arylsulfatase AtsA.
  
    0.667
RMCT_0522
F420-dependent methylene-tetrahydromethanopterin reductase.
 
  
 0.657
RMCT_0410
F420-dependent oxidoreductase.
 
  
 0.578
RMCT_2579
Glyoxalase.
 
  
 0.568
PpsA_2
Beta-ketoacyl synthase.
  
 
 0.546
RMCT_3153
Antibiotic ABC transporter membrane protein.
  
  
 0.491
Fgd1_4
5,10-methylenetetrahydromethanopterin reductase.
 
  
 0.489
RMCT_3968
Luciferase family protein.
 
  
 0.480
RMCT_1123
Putative uncharacterized protein.
 
     0.474
tadA
Cytidine/deoxycytidylate deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
  
 0.465
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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