Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0612Protein of unknown function. (125 aa)    
Predicted Functional Partners:
RMCT_0613
ATP/GTP-binding protein.
 
  
 0.994
RMCT_0610
Integral membrane sensor signal transduction histidine kinase.
 
 0.989
RMCT_0611
roadblock/LC7 family protein.
 
  
 0.982
FadJ
3-hydroxyacyl-CoA dehydrogenase.
  
 0.787
FadB2
3-hydroxybutyryl-CoA dehydrogenase fadB2.
  
 0.720
EryA_1
Acyl transferase domain-containing protein.
 
 0.669
KasA_2
Fatty acid synthase.
  
 0.662
Pks2
Polyketide synthase pks5.
  
 0.638
EchA8_11
enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
  0.634
FixB
Electron transfer flavoprotein alpha subunit fixB.
  
 
 0.632
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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