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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YhjDRibonuclease. (339 aa)    
Predicted Functional Partners:
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.804
RMCT_0625
Alpha/beta hydrolase fold protein.
       0.682
RMCT_3554
Amino acid-binding ACT domain-containing protein.
 
    0.632
ExoA
Exodeoxyribonuclease III Xth.
  
    0.592
tatB
Sec-independent translocase; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
 
   
 0.543
RMCT_2185
Glycogen phosphorylase glgP.
  
  
 0.472
RMCT_0208
Tryptophan-rich sensory protein.
  
  
 0.455
RMCT_4577
Lipoprotein lpqW.
 
     0.455
RMCT_2335
Sphingosine/diacylglycerol kinase-like enzyme.
 
    0.454
PtpA_1
Phosphotyrosine protein phosphatase ptpA; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 0.448
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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