STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TrkA_1Trk system potassium uptake protein ceoB. (223 aa)    
Predicted Functional Partners:
TrkA_2
Trk system potassium uptake protein ceoC.
 
  
0.946
RMCT_0678
Alanine, valine and leucine rich integral membrane protein.
 
   
 0.885
RMCT_0682
tRNA/helicase-type nucleic acid binding protein.
 
     0.717
RsmB
Fmu protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
   0.666
RMCT_0677
SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.634
RMCT_4397
Possible transcriptional regulatory protein.
 
  
 0.584
Mog
Molybdopterin biosynthesis protein mog.
  
    0.517
nusB
Transcription antitermination protein NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
   0.514
MoaE2
Molybdenum cofactor biosynthesis protein E2 moaE2.
  
    0.512
Kch
Transmembrane cation transporter.
      
 0.495
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.