Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TrkA_2Trk system potassium uptake protein ceoC. (221 aa)    
Predicted Functional Partners:
TrkA_1
Trk system potassium uptake protein ceoB.
 
  
0.923
RMCT_0678
Alanine, valine and leucine rich integral membrane protein.
 
   
 0.887
RMCT_0682
tRNA/helicase-type nucleic acid binding protein.
 
    0.748
RMCT_0677
SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.735
RsmB
Fmu protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
 
 0.692
RMCT_4397
Possible transcriptional regulatory protein.
 
  
 0.597
nusB
Transcription antitermination protein NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
 
 0.538
CysG_1
uroporphyrin-III C-methyltransferase hemD.
  
  
 0.502
Mog
Molybdopterin biosynthesis protein mog.
  
    0.499
MoaE2
Molybdenum cofactor biosynthesis protein E2 moaE2.
  
    0.493
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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