STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0682tRNA/helicase-type nucleic acid binding protein. (123 aa)    
Predicted Functional Partners:
RMCT_0681
Integral membrane alanine and leucine rich protein.
       0.883
RMCT_0678
Alanine, valine and leucine rich integral membrane protein.
     0.841
TrkA_2
Trk system potassium uptake protein ceoC.
 
     0.740
TrkA_1
Trk system potassium uptake protein ceoB.
 
     0.717
RecQ_1
ATP-dependent DNA helicase.
  
  
 0.695
RMCT_0741
35 kDa alanine rich protein.
  
  
 0.637
topA
DNA topoisomerase I topA; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA [...]
  
  
 0.626
RMCT_0683
Conserved alanine rich protein.
       0.606
PcrA_3
ATP-dependent DNA helicase II uvrD2.
  
  
 0.569
RMCT_4026
TIGR03085 family protein.
 
   
 0.550
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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