Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0683Conserved alanine rich protein. (251 aa)    
Predicted Functional Partners:
RMCT_0809
Hypothetical protein.
 
  
 0.793
RMCT_0576
Putative uncharacterized protein.
  
     0.760
RMCT_3887
Polyketide cyclase/dehydrase and lipid transport.
  
     0.733
LprG
Protein of unknown function.
  
     0.722
RMCT_3582
Glycoside hydrolase, family 57; Belongs to the glycosyl hydrolase 57 family.
  
     0.669
RebM_2
Type 11 methyltransferase.
 
   
 0.662
RMCT_3584
Transferase.
 
  
 0.657
RMCT_0681
Integral membrane alanine and leucine rich protein.
       0.635
RMCT_2361
Putative uncharacterized protein.
 
 
 0.625
LpqM
Lipoprotein peptidase.
 
   
 0.615
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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