Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Fur | HrdB | RMCT_0755 | RMCT_0697 | Ferric uptake regulation protein furB; Belongs to the Fur family. | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.814 |
| Fur | IdeR_2 | RMCT_0755 | RMCT_0698 | Ferric uptake regulation protein furB; Belongs to the Fur family. | Iron-dependent repressor and activator ideR. | 0.844 |
| Fur | rpoA | RMCT_0755 | RMCT_0527 | Ferric uptake regulation protein furB; Belongs to the Fur family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.938 |
| Fur | rpoB | RMCT_0755 | RMCT_2930 | Ferric uptake regulation protein furB; Belongs to the Fur family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.856 |
| Fur | rpoC | RMCT_0755 | RMCT_2929 | Ferric uptake regulation protein furB; Belongs to the Fur family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.842 |
| Fur | rpoZ | RMCT_0755 | RMCT_3654 | Ferric uptake regulation protein furB; Belongs to the Fur family. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.844 |
| HrdB | Fur | RMCT_0697 | RMCT_0755 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Ferric uptake regulation protein furB; Belongs to the Fur family. | 0.814 |
| HrdB | IdeR_2 | RMCT_0697 | RMCT_0698 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Iron-dependent repressor and activator ideR. | 0.801 |
| HrdB | RMCT_3339 | RMCT_0697 | RMCT_3339 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Transcription factor. | 0.908 |
| HrdB | rbpA | RMCT_0697 | RMCT_0189 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.965 |
| HrdB | rpoA | RMCT_0697 | RMCT_0527 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.978 |
| HrdB | rpoB | RMCT_0697 | RMCT_2930 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.989 |
| HrdB | rpoC | RMCT_0697 | RMCT_2929 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.980 |
| HrdB | rpoZ | RMCT_0697 | RMCT_3654 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.945 |
| HrdB | whiB-5 | RMCT_0697 | RMCT_2334 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Transcriptional regulatory protein whib-like whiB1; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.861 |
| HrdB | whiB-6 | RMCT_0697 | RMCT_2359 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Transcriptional regulatory protein whib-like whiB7; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.827 |
| IdeR_2 | Fur | RMCT_0698 | RMCT_0755 | Iron-dependent repressor and activator ideR. | Ferric uptake regulation protein furB; Belongs to the Fur family. | 0.844 |
| IdeR_2 | HrdB | RMCT_0698 | RMCT_0697 | Iron-dependent repressor and activator ideR. | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.801 |
| IdeR_2 | rpoB | RMCT_0698 | RMCT_2930 | Iron-dependent repressor and activator ideR. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.540 |
| RMCT_3339 | HrdB | RMCT_3339 | RMCT_0697 | Transcription factor. | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.908 |
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