Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Bfr | BfrB | RMCT_0317 | RMCT_3490 | Bacterioferritin bfrA; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. | Possible bacterioferritin BfrB; Iron-storage protein. | 0.981 |
| Bfr | IdeR_2 | RMCT_0317 | RMCT_0698 | Bacterioferritin bfrA; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. | Iron-dependent repressor and activator ideR. | 0.613 |
| BfrB | Bfr | RMCT_3490 | RMCT_0317 | Possible bacterioferritin BfrB; Iron-storage protein. | Bacterioferritin bfrA; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. | 0.981 |
| BfrB | IdeR_2 | RMCT_3490 | RMCT_0698 | Possible bacterioferritin BfrB; Iron-storage protein. | Iron-dependent repressor and activator ideR. | 0.609 |
| DegQ | HrdB | RMCT_1580 | RMCT_0697 | Trypsin-like serine protease with C-terminal PDZ domain. | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.650 |
| DegQ | IdeR_2 | RMCT_1580 | RMCT_0698 | Trypsin-like serine protease with C-terminal PDZ domain. | Iron-dependent repressor and activator ideR. | 0.656 |
| DegQ | RMCT_0741 | RMCT_1580 | RMCT_0741 | Trypsin-like serine protease with C-terminal PDZ domain. | 35 kDa alanine rich protein. | 0.465 |
| Fur | GltB | RMCT_0755 | RMCT_1227 | Ferric uptake regulation protein furB; Belongs to the Fur family. | Ferredoxin-dependent glutamate synthase, large subunit gltB. | 0.476 |
| Fur | HrdB | RMCT_0755 | RMCT_0697 | Ferric uptake regulation protein furB; Belongs to the Fur family. | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.814 |
| Fur | IdeR_2 | RMCT_0755 | RMCT_0698 | Ferric uptake regulation protein furB; Belongs to the Fur family. | Iron-dependent repressor and activator ideR. | 0.844 |
| GltB | Fur | RMCT_1227 | RMCT_0755 | Ferredoxin-dependent glutamate synthase, large subunit gltB. | Ferric uptake regulation protein furB; Belongs to the Fur family. | 0.476 |
| GltB | IdeR_2 | RMCT_1227 | RMCT_0698 | Ferredoxin-dependent glutamate synthase, large subunit gltB. | Iron-dependent repressor and activator ideR. | 0.573 |
| GltB | hemL | RMCT_1227 | RMCT_2602 | Ferredoxin-dependent glutamate synthase, large subunit gltB. | Glutamate-1-semialdehyde aminotransferase. | 0.609 |
| HrdB | DegQ | RMCT_0697 | RMCT_1580 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Trypsin-like serine protease with C-terminal PDZ domain. | 0.650 |
| HrdB | Fur | RMCT_0697 | RMCT_0755 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Ferric uptake regulation protein furB; Belongs to the Fur family. | 0.814 |
| HrdB | IdeR_2 | RMCT_0697 | RMCT_0698 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Iron-dependent repressor and activator ideR. | 0.801 |
| HrdB | RMCT_0741 | RMCT_0697 | RMCT_0741 | RNA polymerase sigma factor sigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 35 kDa alanine rich protein. | 0.781 |
| IdeR_2 | Bfr | RMCT_0698 | RMCT_0317 | Iron-dependent repressor and activator ideR. | Bacterioferritin bfrA; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. | 0.613 |
| IdeR_2 | BfrB | RMCT_0698 | RMCT_3490 | Iron-dependent repressor and activator ideR. | Possible bacterioferritin BfrB; Iron-storage protein. | 0.609 |
| IdeR_2 | DegQ | RMCT_0698 | RMCT_1580 | Iron-dependent repressor and activator ideR. | Trypsin-like serine protease with C-terminal PDZ domain. | 0.656 |
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