Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
TcyBAmino acid ABC transporter. (226 aa)    
Predicted Functional Partners:
ArtM_3
Polar amino acid ABC transporter ATPase.
 
 0.999
FliY
Glutamate binding periplasmic protein.
 0.999
GltK
Amine acid ABC transporter permease.
 
0.996
TcyC
Amino acid ABC transporter ATP-binding protein.
 
 
 0.961
ArtP
Family 3 extracellular solute-binding protein.
 
 
 0.909
ArtJ
Extracellular solute-binding protein.
 
 
 0.895
ArtI
Glutamine-binding lipoprotein glnH.
 
 
 0.894
ArtQ
Amino acid ABC transporter permease.
 
0.776
RMCT_0712
Transmembrane protein.
       0.585
miaB
Methylase of isopentenylated A37 derivatives in tRNA; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
       0.585
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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