Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0720Alpha/beta hydrolase fold protein. (296 aa)    
Predicted Functional Partners:
RMCT_2088
Hypothetical protein.
 
 
 0.604
RMCT_3052
acyl-CoA dehydrogenase.
 
  0.599
PpsA_2
Beta-ketoacyl synthase.
  
 0.587
FadE24
acyl-CoA dehydrogenase.
 
  0.585
Pks2
Polyketide synthase pks5.
  
 0.580
recA
Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
 
 0.540
EryA_1
Acyl transferase domain-containing protein.
  
 0.528
PlsB
Glycerol-3-phosphate acyltransferase; Belongs to the GPAT/DAPAT family.
 
  
 0.527
FadJ
3-hydroxyacyl-CoA dehydrogenase.
 
 0.513
RMCT_1584
acyl-CoA dehydrogenase fadE12.
 
  0.495
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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