Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RMCT_0729Hydrogenase assembly chaperone HypC/HupF. (86 aa)    
Predicted Functional Partners:
RMCT_0728
Hydrogenase maturation protease.
 
  
 0.940
HypD_2
Hydrogenase expression/formation protein HypD.
 
 
 0.915
RMCT_0722
Hydrogen:quinone oxidoreductase.
 
 
 0.888
HypE_2
Hydrogenase expression/formation protein HypE.
 
 
 0.874
HypD_1
Hydrogenase expression/formation protein HypD.
 
 
 0.866
RMCT_0721
Hydrogenase small subunit.
 
 
 0.864
RMCT_0726
Putative uncharacterized protein.
 
  
 0.859
RMCT_0725
Putative uncharacterized protein.
 
     0.825
RMCT_0724
Putative uncharacterized protein.
 
     0.819
RMCT_0723
Thioredoxin-like protein.
 
  
 0.812
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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