STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0736Protein of unknown function. (64 aa)    
Predicted Functional Partners:
CrtX
Alanine rich transferase.
       0.880
RMCT_0739
Membrane protein.
       0.697
LimA
Epoxide hydrolase.
 
     0.694
crgA
Septation inhibitor protein; Involved in cell division; Belongs to the CrgA family.
  
     0.619
RMCT_3016
Oxpp cycle protein opcA.
  
     0.592
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
     
 0.571
nucS
Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
      
 0.571
RMCT_1131
NUDIX hydrolase; Belongs to the Nudix hydrolase family.
  
   
 0.520
RMCT_3901
Acetyltransferase.
 
     0.485
RMCT_1837
Hypothetical protein.
  
     0.456
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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