Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0736Protein of unknown function. (64 aa)    
Predicted Functional Partners:
CrtX
Alanine rich transferase.
       0.865
LimA
Epoxide hydrolase.
 
     0.680
crgA
Septation inhibitor protein; Involved in cell division; Belongs to the CrgA family.
  
     0.619
RMCT_0739
Membrane protein.
       0.614
RMCT_3016
Oxpp cycle protein opcA.
  
     0.592
RMCT_3901
Acetyltransferase.
 
     0.484
nucS
Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
      
 0.479
RMCT_1837
Hypothetical protein.
  
     0.456
RMCT_3861
Protein of unknown function.
  
     0.452
RMCT_0326
Putative uncharacterized protein.
 
     0.417
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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