Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CrtXAlanine rich transferase. (390 aa)    
Predicted Functional Partners:
RMCT_0736
Protein of unknown function.
       0.865
LimA
Epoxide hydrolase.
       0.746
RMCT_0739
Membrane protein.
 
     0.740
RMCT_1130
Hypothetical protein.
  
     0.723
RMCT_4649
Conserved membrane protein of unknown function.
 
     0.669
MmpL3
Transmembrane transport protein mmpL3.
  
   
 0.613
RMCT_0031
Hypothetical protein.
  
     0.608
RMCT_2034
Protein of unknown function.
  
     0.525
RMCT_2656
acyl-ACP thioesterase.
  
     0.514
RMCT_1387
Lipoprotein lprB.
  
     0.512
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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