Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CorC | RMCT_0761 | RMCT_0762 | RMCT_0761 | Transmembrane protein. | Cytidine deaminase. | 0.976 |
| CorC | YbeZ_1 | RMCT_0762 | RMCT_0764 | Transmembrane protein. | phoH-like protein phoH1. | 0.940 |
| CorC | era | RMCT_0762 | RMCT_0760 | Transmembrane protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.974 |
| CorC | ybeY | RMCT_0762 | RMCT_0763 | Transmembrane protein. | Metalloprotease; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.980 |
| RMCT_0761 | CorC | RMCT_0761 | RMCT_0762 | Cytidine deaminase. | Transmembrane protein. | 0.976 |
| RMCT_0761 | YbeZ_1 | RMCT_0761 | RMCT_0764 | Cytidine deaminase. | phoH-like protein phoH1. | 0.874 |
| RMCT_0761 | era | RMCT_0761 | RMCT_0760 | Cytidine deaminase. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.969 |
| RMCT_0761 | ybeY | RMCT_0761 | RMCT_0763 | Cytidine deaminase. | Metalloprotease; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.966 |
| ScpA_1 | era | RMCT_2130 | RMCT_0760 | Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.896 |
| YbeZ_1 | CorC | RMCT_0764 | RMCT_0762 | phoH-like protein phoH1. | Transmembrane protein. | 0.940 |
| YbeZ_1 | RMCT_0761 | RMCT_0764 | RMCT_0761 | phoH-like protein phoH1. | Cytidine deaminase. | 0.874 |
| YbeZ_1 | era | RMCT_0764 | RMCT_0760 | phoH-like protein phoH1. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.905 |
| YbeZ_1 | ybeY | RMCT_0764 | RMCT_0763 | phoH-like protein phoH1. | Metalloprotease; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.973 |
| era | CorC | RMCT_0760 | RMCT_0762 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Transmembrane protein. | 0.974 |
| era | RMCT_0761 | RMCT_0760 | RMCT_0761 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Cytidine deaminase. | 0.969 |
| era | ScpA_1 | RMCT_0760 | RMCT_2130 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | 0.896 |
| era | YbeZ_1 | RMCT_0760 | RMCT_0764 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | phoH-like protein phoH1. | 0.905 |
| era | rpsF | RMCT_0760 | RMCT_1155 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.918 |
| era | rpsG | RMCT_0760 | RMCT_2915 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.882 |
| era | rpsI | RMCT_0760 | RMCT_0543 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.861 |
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