Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0809Hypothetical protein. (249 aa)    
Predicted Functional Partners:
RMCT_0808
DegV family protein.
     
 0.936
RMCT_0810
Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family.
  
  
 0.936
rsfS
Iojap family protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
       0.868
nadD
Nicotinic acid mononucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
       0.868
RMCT_3584
Transferase.
 
   
 0.812
RMCT_3581
Type 11 methyltransferase.
 
  
 0.803
RMCT_0683
Conserved alanine rich protein.
 
  
 0.793
RMCT_3582
Glycoside hydrolase, family 57; Belongs to the glycosyl hydrolase 57 family.
 
   
 0.779
RMCT_0576
Putative uncharacterized protein.
  
     0.773
RMCT_3887
Polyketide cyclase/dehydrase and lipid transport.
  
     0.771
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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