Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GdhB_2NAD-dependent glutamate dehydrogenase gdh. (1625 aa)    
Predicted Functional Partners:
GltB
Ferredoxin-dependent glutamate synthase, large subunit gltB.
     
 0.964
RMCT_0377
FHA domain-containing protein.
    
 
 0.961
GlnA_1
Glutamine synthetase.
    
 0.954
GlnA_2
Glutamine synthetase glnA1.
    
 0.953
RMCT_0906
Hypothetical protein.
  
    0.944
GdhA
Glu/Leu/Phe/Val dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
 0.928
GadA
Glutamate decarboxylase gadB; Belongs to the group II decarboxylase family.
    
 0.914
Kgd
Alpha-ketoglutarate decarboxylase.
  
 
 0.914
RMCT_2708
GCN5-like N-acetyltransferase.
    
 0.909
AspC_1
Aminotransferase AlaT.
     
 0.907
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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